PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_14180V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 173aa    MW: 19889.8 Da    PI: 5.0216
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_14180V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.81.3e-52151191102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql +fw++q   +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di
  Pp3c13_14180V3.1.p  15 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 105
                         7899**999889******************************************************************************* PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdivprdelk
  Pp3c13_14180V3.1.p 106 FDFLVDIVPRDELK 119
                         ***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.66E-3014109IPR009072Histone-fold
PfamPF008082.4E-2137100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-3638115IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNMLQLHYQQ IQKQQLAQFW AQQTQEMEEV NDSKTHQLPL ARIKKIMKSD EDVKMIATEA  60
PVLFSKACEM FILELTLRSW IHTEENKRRT LQRNDIAGAI TRGDIFDFLV DIVPRDELKE  120
EDLGVPWSGV PADGVQYGGM YYPPMPGQPI HPMRAPAVLA PEQQQQPQQQ LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-42911512119HapE
4g92_C1e-42911512119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25191e-145gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026475.11e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP02e-61NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT09e-67A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S158_8V6.11e-100(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-56nuclear factor Y, subunit C2